Attention

This repo is an adaption of https://github.com/ssec-jhu/biospecdb. Images present within this documentation may not entirely reflect the exact working content of this application.

biodb.apps.uploader.io

Functions

array_data_from_json(file)	Read array data of the form {"patient_id": value, "x": [values], "y": [values]} and return data ArrayData instance.
array_data_to_json(file, data[, patient_id, ...])	Convert data to json equivalent to {"patient_id": value, "x": [values], "y": [values]} Returns json str and/or writes to file.
read_array_data(file)	General purpose reader to handle multiple file formats returning ArrayData instance.
read_array_data_table(file[, index_column])	Read in multiple rows of data returning a pandas.DataFrame.
read_meta_data(file[, index_column])	Read in bulk upload meta data file of all Observations and parsable model fields.
read_single_row_array_data_table(file[, ...])	Read in single row array data.

Classes

ArrayData(patient_id, x, y)
FileFormats(value[, names, module, ...])

Exceptions

DataSchemaError