Index

_

__init__() (biodb.qc.qcfilter.QcFilter method) (catalog.models.Dataset method) (explorer.models.Query method) (uploader.exporters.CSVExporter method) (uploader.exporters.ExcelExporter method) (uploader.exporters.JSONExporter method) (uploader.exporters.ZipArrayDataMixin method) (uploader.models.ArrayData method) (uploader.models.ArrayMeasurementType method) (uploader.models.BioSample method) (uploader.models.BioSampleType method) (uploader.models.Instrument method) (uploader.models.Observable method) (uploader.models.Observation method) (uploader.models.Patient method) (uploader.models.QCAnnotation method) (uploader.models.QCAnnotator method) (uploader.models.UploadedFile method) (uploader.models.Visit method) (user.models.Center method) (user.models.User method)

A

acquisition_time (uploader.models.ArrayData attribute) alias (uploader.models.Observable attribute) annotator (uploader.models.QCAnnotation attribute) app_version (catalog.models.Dataset attribute)

array_data (uploader.models.QCAnnotation attribute) array_data_file (uploader.models.UploadedFile attribute) array_data_filenames (catalog.models.Dataset attribute) ArrayData (class in uploader.models) ArrayMeasurementType (class in uploader.models)

B

bio_sample (uploader.models.ArrayData attribute) biodb.apps.uploader.io module biodb.apps.uploader.loaddata module

biodb.apps.uploader.sql module biodb.util module BioSample (class in uploader.models) BioSampleType (class in uploader.models)

C

category (uploader.models.Observable attribute) Center (class in user.models) center (uploader.models.Instrument attribute) (uploader.models.Observable attribute) (uploader.models.Patient attribute) (uploader.models.UploadedFile attribute) (user.models.User attribute)

centrifuge_rpm (uploader.models.BioSample attribute) centrifuge_time (uploader.models.BioSample attribute) cid (uploader.models.Instrument attribute) country (user.models.Center attribute) CSVExporter (class in uploader.exporters)

D

data (uploader.models.ArrayData attribute) data_sha256 (catalog.models.Dataset attribute) Dataset (class in catalog.models) date (uploader.models.ArrayData attribute) date_joined (user.models.User attribute)

days_observed (uploader.models.Observation attribute) (uploader.models.Visit attribute) default (uploader.models.QCAnnotator attribute) description (catalog.models.Dataset attribute) (uploader.models.Observable attribute) (uploader.models.QCAnnotator attribute)

E

email (user.models.User attribute)

ExcelExporter (class in uploader.exporters)

F

file (catalog.models.Dataset attribute) first_name (user.models.User attribute)

freezing_temp (uploader.models.BioSample attribute) freezing_time (uploader.models.BioSample attribute) fully_qualified_class_name (uploader.models.QCAnnotator attribute)

G

get_line_chart() (in module uploader.charts)

get_pie_chart() (in module uploader.charts)

I

id (catalog.models.Dataset attribute) (uploader.models.ArrayData attribute) (uploader.models.Instrument attribute) (user.models.Center attribute) Instrument (class in uploader.models)

instrument (uploader.models.ArrayData attribute) is_active (user.models.User attribute) is_catalogviewer (user.models.User attribute) is_sqluser_change (user.models.User attribute) is_sqluser_view (user.models.User attribute) is_staff (user.models.User attribute)

J

JSONExporter (class in uploader.exporters)

L

last_name (user.models.User attribute)

M

manufacturer (uploader.models.Instrument attribute) measurement_id (uploader.models.ArrayData attribute) measurement_type (uploader.models.ArrayData attribute) meta_data_file (uploader.models.UploadedFile attribute) model (uploader.models.Instrument attribute)

module biodb.apps.uploader.io biodb.apps.uploader.loaddata biodb.apps.uploader.sql biodb.util

N

n_rows (catalog.models.Dataset attribute) name (catalog.models.Dataset attribute) (uploader.models.ArrayMeasurementType attribute) (uploader.models.BioSampleType attribute) (uploader.models.Observable attribute) (uploader.models.QCAnnotator attribute) (user.models.Center attribute)

O

Observable (class in uploader.models) observable (uploader.models.Observation attribute)

observable_value (uploader.models.Observation attribute) Observation (class in uploader.models)

P

Patient (class in uploader.models) patient (uploader.models.Visit attribute) patient_cid (uploader.models.Patient attribute)

patient_id (uploader.models.Patient attribute) power (uploader.models.ArrayData attribute) pressure (uploader.models.ArrayData attribute) previous_visit (uploader.models.Visit attribute)

Q

QCAnnotation (class in uploader.models) QCAnnotator (class in uploader.models)

QcFilter (class in biodb.qc.qcfilter) query (catalog.models.Dataset attribute) Query (class in explorer.models)

R

resolution (uploader.models.ArrayData attribute)

S

sample_cid (uploader.models.BioSample attribute) sample_extraction (uploader.models.BioSample attribute) sample_extraction_tube (uploader.models.BioSample attribute) sample_processing (uploader.models.BioSample attribute) sample_study_id (uploader.models.BioSample attribute)

sample_study_name (uploader.models.BioSample attribute) sample_type (uploader.models.BioSample attribute) serial_number (uploader.models.Instrument attribute) sha256 (catalog.models.Dataset attribute) sql (catalog.models.Dataset attribute)

T

thawing_temp (uploader.models.BioSample attribute)

thawing_time (uploader.models.BioSample attribute)

U

UploadedFile (class in uploader.models)

User (class in user.models) username (user.models.User attribute)

V

validator (uploader.models.Observable attribute) value (uploader.models.QCAnnotation attribute) value_choices (uploader.models.Observable attribute) value_class (uploader.models.Observable attribute)

value_type (uploader.models.QCAnnotator attribute) version (catalog.models.Dataset attribute) Visit (class in uploader.models) visit (uploader.models.BioSample attribute) (uploader.models.Observation attribute)

Z

ZipArrayDataMixin (class in uploader.exporters)